PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QK1RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 252aa    MW: 30046.6 Da    PI: 10.253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QK1RAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-062850123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aradu.QK1RA 28 FTCEICNKGFQRDQNLQLHKRGH 50
                 89******************988 PP

2zf-C2H213.90.0001688110123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Aradu.QK1RA  88 WKCEKCSKKYAVQSDWKAHSKTC 110
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-62750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-72750No hitNo description
PROSITE profilePS5015711.0532850IPR007087Zinc finger, C2H2
PfamPF121712.2E-52850IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0142850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-478109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-783108No hitNo description
SMARTSM0035514088108IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFFLLICSDP YVEVIALSPK SLLATNRFTC EICNKGFQRD QNLQLHKRGH NLPWKLKQRT  60
SKEIRKKVYM CPKPSCVHHD LKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYICDCG  120
TLFLRLHSPQ RKTMAKKRER HNELLHRKLF MPPETTNLFN DKNSYRKLSE IVDQAKRRAE  180
VVRLRELHTL NYSNGISFSF RKDPSFKPQG GQLRENDMDY DTDENSMATL RRHLRGATEE  240
YYRYKRWRDI GQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15466KLKQRTSKEIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9ZWA61e-68IDD3_ARATH; Zinc finger protein MAGPIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.18e-59C2H2 family protein